Fetches gene IDs and corresponding pathway IDs and names for the provided organism.
fetch_kegg(species)a character value providing an abreviated species name. "hsa" for human, "eco" for E. coli and "sce" for S. cerevisiae. Additional possible names can be found for eukaryotes and for prokaryotes.
A data frame that contains gene IDs with corresponding pathway IDs and names for a selected organism.
# \donttest{
kegg <- fetch_kegg(species = "hsa")
head(kegg)
#> # A tibble: 6 × 4
#> kegg_id pathway_id pathway_name uniprot_id
#> <chr> <chr> <chr> <chr>
#> 1 hsa:10327 hsa00010 Glycolysis / Gluconeogenesis - Homo sapiens (… P14550
#> 2 hsa:10327 hsa00010 Glycolysis / Gluconeogenesis - Homo sapiens (… V9HWI0
#> 3 hsa:124 hsa00010 Glycolysis / Gluconeogenesis - Homo sapiens (… P07327
#> 4 hsa:125 hsa00010 Glycolysis / Gluconeogenesis - Homo sapiens (… P00325
#> 5 hsa:125 hsa00010 Glycolysis / Gluconeogenesis - Homo sapiens (… V9HW50
#> 6 hsa:126 hsa00010 Glycolysis / Gluconeogenesis - Homo sapiens (… P00326
# }