Fetches information about disordered protein regions from MobiDB.

fetch_mobidb(organism_id, protein_ids)

Arguments

organism_id

a character value that specifies the NCBI taxonomy identifier of an organism (TaxId). Possible inputs inlude only: "9606" (Human), "559292" (Yeast), "83333" (E. coli), "10090" (Mouse), "9913" (Bovine), "7227" (Fruit fly).

protein_ids

a character vector of UniProt identifiers. These need to be proteins from the organism provided in organism_id.

Value

A data frame that contains start and end positions for disordered regions for each protein provided. The feature column contains information on the source of this annotation. More information on the source can be found here.

Examples

# \donttest{ fetch_mobidb( organism_id = "83333", protein_ids = c("P0A799", "P62707") )
#> # A tibble: 2 × 7 #> acc name feature start end content_fraction content_count #> <chr> <chr> <chr> <chr> <chr> <dbl> <dbl> #> 1 P0A799 Phosphoglycerat… derived-mi… 1 1 0.003 1 #> 2 P62707 2,3-bisphosphog… derived-mi… 249 250 0.008 2
# }