Fetches proteome data from UniProt for the provided organism ID.

fetch_uniprot_proteome(organism_id, columns = c("accession"), reviewed = TRUE)



a numeric value that specifies the NCBI taxonomy identifier (TaxId) for an organism.


a character vector of metadata columns that should be imported from UniProt (all possible columns can be found here. For cross-referenced database provide the database name with the prefix "xref_", e.g. "xref_pdb"). Note: Not more than one or two columns should be selected otherwise the function will not be able to efficiently retrieve the information. If more information is needed, fetch_uniprot() can be used with the IDs retrieved by this function.


a logical value that determines if only reviewed protein entries will be retrieved.


A data frame that contains all protein metadata specified in columns for the organism of choice.


# \donttest{
#> # A tibble: 6 × 1
#>   accession 
#>   <chr>     
#> 1 A0A087X1C5
#> 2 A0A0B4J2F0
#> 3 A0A0B4J2F2
#> 4 A0A0C5B5G6
#> 5 A0A0K2S4Q6
#> 6 A0A0U1RRE5
# }