Fetches proteome data from UniProt for the provided organism ID.
fetch_uniprot_proteome(organism_id, columns = c("accession"), reviewed = TRUE)a numeric value that specifies the NCBI taxonomy identifier (TaxId) for an organism.
a character vector of metadata columns that should be imported from UniProt (all
possible columns can be found here. For
cross-referenced database provide the database name with the prefix "xref_", e.g. "xref_pdb").
Note: Not more than one or two columns should be selected otherwise the function will not be
able to efficiently retrieve the information. If more information is needed, fetch_uniprot()
can be used with the IDs retrieved by this function.
a logical value that determines if only reviewed protein entries will be retrieved.
A data frame that contains all protein metadata specified in columns for the
organism of choice.
# \donttest{
head(fetch_uniprot_proteome(9606))
#> # A tibble: 6 × 1
#> accession
#> <chr>
#> 1 A0A087X1C5
#> 2 A0A0B4J2F0
#> 3 A0A0B4J2F2
#> 4 A0A0C5B5G6
#> 5 A0A0K2S4Q6
#> 6 A0A0U1RRE5
# }